Federated learning (FL) enables the building of robust and generalizable AI models by leveraging diverse datasets from multiple collaborators without centralizing the data. We created NVIDIA FLARE as an open-source software development kit (SDK) to make it easier for data scientists to use FL in their research and real-world applications. The SDK includes solutions for state-of-the-art FL algorithms and federated machine learning approaches, which facilitate building workflows for distributed learning across enterprises and enable platform developers to create a secure, privacy-preserving offering for multiparty collaboration utilizing homomorphic encryption or differential privacy. The SDK is a lightweight, flexible, and scalable Python package, and allows researchers to bring their data science workflows implemented in any training libraries (PyTorch, TensorFlow, XGBoost, or even NumPy) and apply them in real-world FL settings. This paper introduces the key design principles of FLARE and illustrates some use cases (e.g., COVID analysis) with customizable FL workflows that implement different privacy-preserving algorithms. Code is available at https://github.com/NVIDIA/NVFlare.
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自动生物医学图像分析的领域至关重要地取决于算法验证的可靠和有意义的性能指标。但是,当前的度量使用通常是不明智的,并且不能反映基本的域名。在这里,我们提出了一个全面的框架,该框架指导研究人员以问题意识的方式选择绩效指标。具体而言,我们专注于生物医学图像分析问题,这些问题可以解释为图像,对象或像素级别的分类任务。该框架首先编译域兴趣 - 目标结构 - ,数据集和算法与输出问题相关的属性的属性与问题指纹相关,同时还将其映射到适当的问题类别,即图像级分类,语义分段,实例,实例细分或对象检测。然后,它指导用户选择和应用一组适当的验证指标的过程,同时使他们意识到与个人选择相关的潜在陷阱。在本文中,我们描述了指标重新加载推荐框架的当前状态,目的是从图像分析社区获得建设性的反馈。当前版本是在由60多个图像分析专家的国际联盟中开发的,将在社区驱动的优化之后公开作为用户友好的工具包提供。
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域适应(DA)最近在医学影像社区提出了强烈的兴趣。虽然已经提出了大量DA技术进行了用于图像分割,但大多数这些技术已经在私有数据集或小公共可用数据集上验证。此外,这些数据集主要解决了单级问题。为了解决这些限制,与第24届医学图像计算和计算机辅助干预(Miccai 2021)结合第24届国际会议组织交叉模态域适应(Crossmoda)挑战。 Crossmoda是无监督跨型号DA的第一个大型和多级基准。挑战的目标是分割参与前庭施瓦新瘤(VS)的后续和治疗规划的两个关键脑结构:VS和Cochleas。目前,使用对比度增强的T1(CET1)MRI进行VS患者的诊断和监测。然而,使用诸如高分辨率T2(HRT2)MRI的非对比度序列越来越感兴趣。因此,我们创建了一个无人监督的跨模型分段基准。训练集提供注释CET1(n = 105)和未配对的非注释的HRT2(n = 105)。目的是在测试集中提供的HRT2上自动对HRT2进行单侧VS和双侧耳蜗分割(n = 137)。共有16支球队提交了评估阶段的算法。顶级履行团队达成的表现水平非常高(最佳中位数骰子 - vs:88.4%; Cochleas:85.7%)并接近完全监督(中位数骰子 - vs:92.5%;耳蜗:87.7%)。所有顶级执行方法都使用图像到图像转换方法将源域图像转换为伪目标域图像。然后使用这些生成的图像和为源图像提供的手动注释进行培训分割网络。
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尽管自动图像分析的重要性不断增加,但最近的元研究揭示了有关算法验证的主要缺陷。性能指标对于使用的自动算法的有意义,客观和透明的性能评估和验证尤其是关键,但是在使用特定的指标进行给定的图像分析任务时,对实际陷阱的关注相对较少。这些通常与(1)无视固有的度量属性,例如在存在类不平衡或小目标结构的情况下的行为,(2)无视固有的数据集属性,例如测试的非独立性案例和(3)无视指标应反映的实际生物医学领域的兴趣。该动态文档的目的是说明图像分析领域通常应用的性能指标的重要局限性。在这种情况下,它重点介绍了可以用作图像级分类,语义分割,实例分割或对象检测任务的生物医学图像分析问题。当前版本是基于由全球60多家机构的国际图像分析专家进行的关于指标的Delphi流程。
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Data-driven Machine Learning has emerged as a promising approach for building accurate and robust statistical models from medical data, which is collected in huge volumes by modern healthcare systems. Existing medical data is not fully exploited by ML primarily because it sits in data silos and privacy concerns restrict access to this data. However, without access to sufficient data, ML will be prevented from reaching its full potential and, ultimately, from making the transition from research to clinical practice. This paper considers key factors contributing to this issue, explores how Federated Learning (FL) may provide a solution for the future of digital health and highlights the challenges and considerations that need to * Disclaimer: The opinions expressed herein are those of the authors and do not necessarily represent those of the institutions they are affiliated with, e.g. the U.S. Department of Health and Human Services or the National Institutes of Health. This is a pre-print version of https://www.nature.com/articles/s41746-020-00323-1 be addressed.
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In the future, service robots are expected to be able to operate autonomously for long periods of time without human intervention. Many work striving for this goal have been emerging with the development of robotics, both hardware and software. Today we believe that an important underpinning of long-term robot autonomy is the ability of robots to learn on site and on-the-fly, especially when they are deployed in changing environments or need to traverse different environments. In this paper, we examine the problem of long-term autonomy from the perspective of robot learning, especially in an online way, and discuss in tandem its premise "data" and the subsequent "deployment".
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A systematic review on machine-learning strategies for improving generalizability (cross-subjects and cross-sessions) electroencephalography (EEG) based in emotion classification was realized. In this context, the non-stationarity of EEG signals is a critical issue and can lead to the Dataset Shift problem. Several architectures and methods have been proposed to address this issue, mainly based on transfer learning methods. 418 papers were retrieved from the Scopus, IEEE Xplore and PubMed databases through a search query focusing on modern machine learning techniques for generalization in EEG-based emotion assessment. Among these papers, 75 were found eligible based on their relevance to the problem. Studies lacking a specific cross-subject and cross-session validation strategy and making use of other biosignals as support were excluded. On the basis of the selected papers' analysis, a taxonomy of the studies employing Machine Learning (ML) methods was proposed, together with a brief discussion on the different ML approaches involved. The studies with the best results in terms of average classification accuracy were identified, supporting that transfer learning methods seem to perform better than other approaches. A discussion is proposed on the impact of (i) the emotion theoretical models and (ii) psychological screening of the experimental sample on the classifier performances.
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We introduce a new probabilistic temporal logic for the verification of Markov Decision Processes (MDP). Our logic is the first to include operators for causal reasoning, allowing us to express interventional and counterfactual queries. Given a path formula $\phi$, an interventional property is concerned with the satisfaction probability of $\phi$ if we apply a particular change $I$ to the MDP (e.g., switching to a different policy); a counterfactual allows us to compute, given an observed MDP path $\tau$, what the outcome of $\phi$ would have been had we applied $I$ in the past. For its ability to reason about different configurations of the MDP, our approach represents a departure from existing probabilistic temporal logics that can only reason about a fixed system configuration. From a syntactic viewpoint, we introduce a generalized counterfactual operator that subsumes both interventional and counterfactual probabilities as well as the traditional probabilistic operator found in e.g., PCTL. From a semantics viewpoint, our logic is interpreted over a structural causal model (SCM) translation of the MDP, which gives us a representation amenable to counterfactual reasoning. We provide a proof-of-concept evaluation of our logic on a reach-avoid task in a grid-world model.
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Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies on semantic and contextual similarity. We employ an fMRI dataset of natural image vision and create a deep learning decoding pipeline inspired by the existence of both bottom-up and top-down processes in human vision. We train a linear brain-to-feature model to map fMRI activity features to visual stimuli features, assuming that the brain projects visual information onto a space that is homeomorphic to the latent space represented by the last convolutional layer of a pretrained convolutional neural network, which typically collects a variety of semantic features that summarize and highlight similarities and differences between concepts. These features are then categorized in the latent space using a nearest-neighbor strategy, and the results are used to condition a generative latent diffusion model to create novel images. From fMRI data only, we produce reconstructions of visual stimuli that match the original content very well on a semantic level, surpassing the state of the art in previous literature. We evaluate our work and obtain good results using a quantitative semantic metric (the Wu-Palmer similarity metric over the WordNet lexicon, which had an average value of 0.57) and perform a human evaluation experiment that resulted in correct evaluation, according to the multiplicity of human criteria in evaluating image similarity, in over 80% of the test set.
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Autoregressive processes naturally arise in a large variety of real-world scenarios, including e.g., stock markets, sell forecasting, weather prediction, advertising, and pricing. When addressing a sequential decision-making problem in such a context, the temporal dependence between consecutive observations should be properly accounted for converge to the optimal decision policy. In this work, we propose a novel online learning setting, named Autoregressive Bandits (ARBs), in which the observed reward follows an autoregressive process of order $k$, whose parameters depend on the action the agent chooses, within a finite set of $n$ actions. Then, we devise an optimistic regret minimization algorithm AutoRegressive Upper Confidence Bounds (AR-UCB) that suffers regret of order $\widetilde{\mathcal{O}} \left( \frac{(k+1)^{3/2}\sqrt{nT}}{(1-\Gamma)^2} \right)$, being $T$ the optimization horizon and $\Gamma < 1$ an index of the stability of the system. Finally, we present a numerical validation in several synthetic and one real-world setting, in comparison with general and specific purpose bandit baselines showing the advantages of the proposed approach.
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