We introduce and analyze NetOTC, a procedure for the comparison and soft alignment of weighted networks. Given two networks and a cost function relating their vertices, NetOTC finds an appropriate coupling of their associated random walks having minimum expected cost. The minimizing cost provides a numerical measure of the difference between the networks, while the optimal transport plan itself provides interpretable, probabilistic alignments of the vertices and edges of the two networks. The cost function employed can be based, for example, on vertex degrees, externally defined features, or Euclidean embeddings. Coupling of the full random walks, rather than their stationary distributions, ensures that NetOTC captures local and global information about the given networks. NetOTC applies to networks of different size and structure, and does not the require specification of free parameters. NetOTC respects edges, in the sense that vertex pairs in the given networks are aligned with positive probability only if they are adjacent in the given networks. We investigate a number of theoretical properties of NetOTC that support its use, including metric properties of the minimizing cost and its connection with short- and long-run average cost. In addition, we introduce a new notion of factor for weighted networks, and establish a close connection between factors and NetOTC. Complementing the theory, we present simulations and numerical experiments showing that NetOTC is competitive with, and sometimes superior to, other optimal transport-based network comparison methods in the literature. In particular, NetOTC shows promise in identifying isomorphic networks using a local (degree-based) cost function.

我们研究了有限空间中值的静止随机过程的最佳运输。为了反映潜在流程的实向性，我们限制了对固定联轴器的关注，也称为联系。由此产生的最佳连接问题捕获感兴趣过程的长期平均行为的差异。我们介绍了最优联接的估算和最佳的加入成本，我们建立了温和条件下估算器的一致性。此外，在更强的混合假设下，我们为估计的最佳连接成本建立有限样本误差速率，其延伸了IID案件中的最佳已知结果。最后，我们将一致性和速率分析扩展到最佳加入问题的熵惩罚版本。

Graph clustering is a fundamental problem in unsupervised learning, with numerous applications in computer science and in analysing real-world data. In many real-world applications, we find that the clusters have a significant high-level structure. This is often overlooked in the design and analysis of graph clustering algorithms which make strong simplifying assumptions about the structure of the graph. This thesis addresses the natural question of whether the structure of clusters can be learned efficiently and describes four new algorithmic results for learning such structure in graphs and hypergraphs. All of the presented theoretical results are extensively evaluated on both synthetic and real-word datasets of different domains, including image classification and segmentation, migration networks, co-authorship networks, and natural language processing. These experimental results demonstrate that the newly developed algorithms are practical, effective, and immediately applicable for learning the structure of clusters in real-world data.

马尔可夫链是一类概率模型，在定量科学中已广泛应用。这部分是由于它们的多功能性，但是可以通过分析探测的便利性使其更加复杂。本教程为马尔可夫连锁店提供了深入的介绍，并探索了它们与图形和随机步行的联系。我们利用从线性代数和图形论的工具来描述不同类型的马尔可夫链的过渡矩阵，特别着眼于探索与这些矩阵相对应的特征值和特征向量的属性。提出的结果与机器学习和数据挖掘中的许多方法有关，我们在各个阶段描述了这些方法。本文并没有本身就成为一项新颖的学术研究，而是提出了一些已知结果的集合以及一些新概念。此外，该教程的重点是向读者提供直觉，而不是正式的理解，并且仅假定对线性代数和概率理论的概念的基本曝光。因此，来自各种学科的学生和研究人员可以访问它。

随机块模型（SBM）是一个随机图模型，其连接不同的顶点组不同。它被广泛用作研究聚类和社区检测的规范模型，并提供了肥沃的基础来研究组合统计和更普遍的数据科学中出现的信息理论和计算权衡。该专着调查了最近在SBM中建立社区检测的基本限制的最新发展，无论是在信息理论和计算方案方面，以及各种恢复要求，例如精确，部分和弱恢复。讨论的主要结果是在Chernoff-Hellinger阈值中进行精确恢复的相转换，Kesten-Stigum阈值弱恢复的相变，最佳的SNR - 单位信息折衷的部分恢复以及信息理论和信息理论之间的差距计算阈值。该专着给出了在寻求限制时开发的主要算法的原则推导，特别是通过绘制绘制，半定义编程，（线性化）信念传播，经典/非背带频谱和图形供电。还讨论了其他块模型的扩展，例如几何模型和一些开放问题。

The stochastic block model (SBM) is a random graph model with planted clusters. It is widely employed as a canonical model to study clustering and community detection, and provides generally a fertile ground to study the statistical and computational tradeoffs that arise in network and data sciences.This note surveys the recent developments that establish the fundamental limits for community detection in the SBM, both with respect to information-theoretic and computational thresholds, and for various recovery requirements such as exact, partial and weak recovery (a.k.a., detection). The main results discussed are the phase transitions for exact recovery at the Chernoff-Hellinger threshold, the phase transition for weak recovery at the Kesten-Stigum threshold, the optimal distortion-SNR tradeoff for partial recovery, the learning of the SBM parameters and the gap between information-theoretic and computational thresholds.The note also covers some of the algorithms developed in the quest of achieving the limits, in particular two-round algorithms via graph-splitting, semi-definite programming, linearized belief propagation, classical and nonbacktracking spectral methods. A few open problems are also discussed.

通常，使用网络编码在物理，生物，社会和信息科学中应用程序中复杂系统中实体之间的交互体系结构。为了研究复杂系统的大规模行为，研究网络中的中尺度结构是影响这种行为的构件。我们提出了一种新方法来描述网络中的低率中尺度结构，并使用多种合成网络模型和经验友谊，协作和蛋白质 - 蛋白质相互作用（PPI）网络说明了我们的方法。我们发现，这些网络拥有相对较少的“潜在主题”，可以成功地近似固定的中尺度上网络的大多数子图。我们使用一种称为“网络词典学习”（NDL）的算法，该算法结合了网络采样方法和非负矩阵分解，以学习给定网络的潜在主题。使用一组潜在主题对网络进行编码的能力具有多种应用于网络分析任务的应用程序，例如比较，降解和边缘推理。此外，使用我们的新网络去核和重建（NDR）算法，我们演示了如何通过仅使用直接从损坏的网络中学习的潜在主题来贬低损坏的网络。

Network data are ubiquitous in modern machine learning, with tasks of interest including node classification, node clustering and link prediction. A frequent approach begins by learning an Euclidean embedding of the network, to which algorithms developed for vector-valued data are applied. For large networks, embeddings are learned using stochastic gradient methods where the sub-sampling scheme can be freely chosen. Despite the strong empirical performance of such methods, they are not well understood theoretically. Our work encapsulates representation methods using a subsampling approach, such as node2vec, into a single unifying framework. We prove, under the assumption that the graph is exchangeable, that the distribution of the learned embedding vectors asymptotically decouples. Moreover, we characterize the asymptotic distribution and provided rates of convergence, in terms of the latent parameters, which includes the choice of loss function and the embedding dimension. This provides a theoretical foundation to understand what the embedding vectors represent and how well these methods perform on downstream tasks. Notably, we observe that typically used loss functions may lead to shortcomings, such as a lack of Fisher consistency.

这篇综述的目的是将读者介绍到图表内，以将其应用于化学信息学中的分类问题。图内核是使我们能够推断分子的化学特性的功能，可以帮助您完成诸如寻找适合药物设计的化合物等任务。内核方法的使用只是一种特殊的两种方式量化了图之间的相似性。我们将讨论限制在这种方法上，尽管近年来已经出现了流行的替代方法，但最著名的是图形神经网络。

我们开发了一种高效的随机块模型中的弱恢复算法。该算法与随机块模型的Vanilla版本的最佳已知算法的统计保证匹配。从这个意义上讲，我们的结果表明，随机块模型没有稳健性。我们的工作受到最近的银行，Mohanty和Raghavendra（SODA 2021）的工作，为相应的区别问题提供了高效的算法。我们的算法及其分析显着脱离了以前的恢复。关键挑战是我们算法的特殊优化景观：种植的分区可能远非最佳意义，即完全不相关的解决方案可以实现相同的客观值。这种现象与PCA的BBP相转变的推出效应有关。据我们所知，我们的算法是第一个在非渐近设置中存在这种推出效果的鲁棒恢复。我们的算法是基于凸优化的框架的实例化（与平方和不同的不同），这对于其他鲁棒矩阵估计问题可能是有用的。我们的分析的副产物是一种通用技术，其提高了任意强大的弱恢复算法的成功（输入的随机性）从恒定（或缓慢消失）概率以指数高概率。

In recent years, spectral clustering has become one of the most popular modern clustering algorithms. It is simple to implement, can be solved efficiently by standard linear algebra software, and very often outperforms traditional clustering algorithms such as the k-means algorithm. On the first glance spectral clustering appears slightly mysterious, and it is not obvious to see why it works at all and what it really does. The goal of this tutorial is to give some intuition on those questions. We describe different graph Laplacians and their basic properties, present the most common spectral clustering algorithms, and derive those algorithms from scratch by several different approaches. Advantages and disadvantages of the different spectral clustering algorithms are discussed.

本文介绍了一种新的基于仿真的推理程序，以对访问I.I.D. \ samples的多维概率分布进行建模和样本，从而规避明确建模密度函数或设计Markov Chain Monte Carlo的通常方法。我们提出了一个称为可逆的Gromov-monge（RGM）距离的新概念的距离和同构的动机，并研究了RGM如何用于设计新的转换样本，以执行基于模拟的推断。我们的RGM采样器还可以估计两个异质度量度量空间之间的最佳对齐$（\ cx，\ mu，c _ {\ cx}）$和$（\ cy，\ cy，\ nu，c _ {\ cy}）$从经验数据集中，估计的地图大约将一个量度$ \ mu $推向另一个$ \ nu $，反之亦然。我们研究了RGM距离的分析特性，并在轻度条件下得出RGM等于经典的Gromov-Wasserstein距离。奇怪的是，与Brenier的两极分解结合了连接，我们表明RGM采样器以$ C _ {\ cx} $和$ C _ {\ cy} $的正确选择诱导了强度同构的偏见。研究了有关诱导采样器的收敛，表示和优化问题的统计率。还展示了展示RGM采样器有效性的合成和现实示例。

在过去十年中，图形内核引起了很多关注，并在结构化数据上发展成为一种快速发展的学习分支。在过去的20年中，该领域发生的相当大的研究活动导致开发数十个图形内核，每个图形内核都对焦于图形的特定结构性质。图形内核已成功地成功地在广泛的域中，从社交网络到生物信息学。本调查的目标是提供图形内核的文献的统一视图。特别是，我们概述了各种图形内核。此外，我们对公共数据集的几个内核进行了实验评估，并提供了比较研究。最后，我们讨论图形内核的关键应用，并概述了一些仍有待解决的挑战。

Kernel matrices, as well as weighted graphs represented by them, are ubiquitous objects in machine learning, statistics and other related fields. The main drawback of using kernel methods (learning and inference using kernel matrices) is efficiency -- given $n$ input points, most kernel-based algorithms need to materialize the full $n \times n$ kernel matrix before performing any subsequent computation, thus incurring $\Omega(n^2)$ runtime. Breaking this quadratic barrier for various problems has therefore, been a subject of extensive research efforts. We break the quadratic barrier and obtain $\textit{subquadratic}$ time algorithms for several fundamental linear-algebraic and graph processing primitives, including approximating the top eigenvalue and eigenvector, spectral sparsification, solving linear systems, local clustering, low-rank approximation, arboricity estimation and counting weighted triangles. We build on the recent Kernel Density Estimation framework, which (after preprocessing in time subquadratic in $n$) can return estimates of row/column sums of the kernel matrix. In particular, we develop efficient reductions from $\textit{weighted vertex}$ and $\textit{weighted edge sampling}$ on kernel graphs, $\textit{simulating random walks}$ on kernel graphs, and $\textit{importance sampling}$ on matrices to Kernel Density Estimation and show that we can generate samples from these distributions in $\textit{sublinear}$ (in the support of the distribution) time. Our reductions are the central ingredient in each of our applications and we believe they may be of independent interest. We empirically demonstrate the efficacy of our algorithms on low-rank approximation (LRA) and spectral sparsification, where we observe a $\textbf{9x}$ decrease in the number of kernel evaluations over baselines for LRA and a $\textbf{41x}$ reduction in the graph size for spectral sparsification.

We study a family of adversarial multiclass classification problems and provide equivalent reformulations in terms of: 1) a family of generalized barycenter problems introduced in the paper and 2) a family of multimarginal optimal transport problems where the number of marginals is equal to the number of classes in the original classification problem. These new theoretical results reveal a rich geometric structure of adversarial learning problems in multiclass classification and extend recent results restricted to the binary classification setting. A direct computational implication of our results is that by solving either the barycenter problem and its dual, or the MOT problem and its dual, we can recover the optimal robust classification rule and the optimal adversarial strategy for the original adversarial problem. Examples with synthetic and real data illustrate our results.

最近有一项激烈的活动在嵌入非常高维和非线性数据结构的嵌入中，其中大部分在数据科学和机器学习文献中。我们分四部分调查这项活动。在第一部分中，我们涵盖了非线性方法，例如主曲线，多维缩放，局部线性方法，ISOMAP，基于图形的方法和扩散映射，基于内核的方法和随机投影。第二部分与拓扑嵌入方法有关，特别是将拓扑特性映射到持久图和映射器算法中。具有巨大增长的另一种类型的数据集是非常高维网络数据。第三部分中考虑的任务是如何将此类数据嵌入中等维度的向量空间中，以使数据适合传统技术，例如群集和分类技术。可以说，这是算法机器学习方法与统计建模（所谓的随机块建模）之间的对比度。在论文中，我们讨论了两种方法的利弊。调查的最后一部分涉及嵌入$ \ mathbb {r}^ 2 $，即可视化中。提出了三种方法：基于第一部分，第二和第三部分中的方法，$ t $ -sne，UMAP和大节。在两个模拟数据集上进行了说明和比较。一个由嘈杂的ranunculoid曲线组成的三胞胎，另一个由随机块模型和两种类型的节点产生的复杂性的网络组成。

我们介绍了一种新颖的谐波分析，用于在函数上定义的函数，随机步行操作员是基石。作为第一步，我们将随机步行操作员的一组特征向量作为非正交傅里叶类型的功能，用于通过定向图。我们通过将从其Dirichlet能量获得的随机步行操作员的特征向量的变化与其相关的特征值的真实部分连接来发现频率解释。从这个傅立叶基础，我们可以进一步继续，并在有向图中建立多尺度分析。通过将Coifman和MagGioni扩展到定向图，我们提出了一种冗余小波变换和抽取的小波变换。因此，我们对导向图的谐波分析的发展导致我们考虑应用于突出了我们框架效率的指示图的图形上的半监督学习问题和信号建模问题。

随着大型网络在重要领域的相关领域的相关性，例如对疾病传播的联系网络的研究，或社交网络对地缘政治的影响，已经有必要研究可扩展到非常大的网络的机器学习工具，通常包含数百万节点。一种主要类别可扩展算法称为网络表示学习或网络嵌入。这些算法尝试通过首次运行多个随机散步，然后使用观察到的随机步行段中的每对节点的共同数量来学习网络功能（例如〜节点）的表示，以获得一些节点的低维表示欧几里德空间。本文的目的是严格地了解两个主要算法，深途化和Node2VEC的性能，以恢复与地面真理社区的规范网络模型的社区。根据图的稀疏性，我们发现所需的随机步道段的长度，使得相应的观察到的共生窗口能够对底层社区分配的几乎精确恢复。我们证明，考虑到一些固定的共同发生窗口，使用随机散步的Node2Vec与低横向概率的随机散步可以相比，与使用简单随机散步的深度扫视相比，稀疏网络可以成功。此外，如果稀疏参数低，我们提供了证据表明这些算法几乎完全恢复可能不会成功。该分析需要开发用于对具有底层低级结构的随机网络计数的通用工具，这与独立兴趣。

通过学习网络节点的欧几里德嵌入的欧几里德嵌入，求解求解任务的常用方法，例如节点分类或链路预测，从该欧几里德嵌入可以应用常规机器学习方法。对于诸如DeadWalk和Node2VEC等无人驾驶的随机漫游方法，在嵌入向量上为丢失添加$ \ ell_2 $罚款，导致下游任务性能提高。在本文中，我们研究了这一正规化的影响，并证明，在图中的交换性假设下，它渐近地导致学习核算型惩罚的石墨朗。特别地，惩罚的确切形式取决于随机梯度下降中使用的所使用的分配方法来学习嵌入。我们还经验地说明了将节点协变量转换为$ \ ell_2 $正则化Node2vec Embeddings导致可比性，如果不是以非线性方式合并节点协变量和网络结构的方法。

Motivated by alignment of correlated sparse random graphs, we introduce a hypothesis testing problem of deciding whether or not two random trees are correlated. We obtain sufficient conditions under which this testing is impossible or feasible. We propose MPAlign, a message-passing algorithm for graph alignment inspired by the tree correlation detection problem. We prove MPAlign to succeed in polynomial time at partial alignment whenever tree detection is feasible. As a result our analysis of tree detection reveals new ranges of parameters for which partial alignment of sparse random graphs is feasible in polynomial time. We then conjecture that graph alignment is not feasible in polynomial time when the associated tree detection problem is impossible. If true, this conjecture together with our sufficient conditions on tree detection impossibility would imply the existence of a hard phase for graph alignment, i.e. a parameter range where alignment cannot be done in polynomial time even though it is known to be feasible in non-polynomial time.