The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

鉴定抗微生物肽的靶标是研究先天免疫反应和打击抗生素抗性的基本步骤，更广泛，精确的药物和公共卫生。关于鉴定（I）肽是抗微生物肽（AMP）的统计和计算方法是否有广泛的研究，或者是哪种靶向这些序列（克阳性，革兰氏阴性）的靶序列， 等等。）。尽管存在对此问题的深度学习方法，但大多数都无法处理小型AMP类（抗昆虫，抗寄生虫等）。更重要的是，一些AMP可以有多个目标，前面的方法无法考虑。在这项研究中，我们通过从各种AMP数据库收集和清洁氨基酸来构建多样化和综合的多标签蛋白序列数据库。为了为小类数据集产生有效的表示和特征，我们利用培训的蛋白质语言模型，培训了超过2.5亿蛋白序列。基于此，我们开发了一个端到端的分层多标签深森林框架，HMD-AMP，全面注释放大器。在识别AMP之后，它进一步预测了AMP可以从11个可用类中有效杀死的目标。广泛的实验表明，我们的框架在二进制分类任务和多标签分类任务中占据了最先进的模型，尤其是在次要类上。模型对抗特征和小扰动并产生有前途的结果。我们认为HMD-AMP对不同抗微生物肽的未来湿式实验室调查有助于不同抗菌肽的先天结构性质，并为抗生素进行精确药物构建有前途的实证内衬。

In this work, we propose a self-supervised multi-agent system, termed a memory-like adaptive modeling multi-agent learning system (MAMMALS), that realizes online learning towards behavioral pattern clustering tasks for time series. Encoding the visual behaviors as discrete time series(DTS), and training and modeling them in the multi-agent system with a bio-memory-like form. We finally implemented a fully decentralized multi-agent system design framework and completed its feasibility verification in a surveillance video application scenario on vehicle path clustering. In multi-agent learning, using learning methods designed for individual agents will typically perform poorly globally because of the behavior of ignoring the synergy between agents.

The ability to learn from human demonstration endows robots with the ability to automate various tasks. However, directly learning from human demonstration is challenging since the structure of the human hand can be very different from the desired robot gripper. In this work, we show that manipulation skills can be transferred from a human to a robot through the use of micro-evolutionary reinforcement learning, where a five-finger human dexterous hand robot gradually evolves into a commercial robot, while repeated interacting in a physics simulator to continuously update the policy that is first learned from human demonstration. To deal with the high dimensions of robot parameters, we propose an algorithm for multi-dimensional evolution path searching that allows joint optimization of both the robot evolution path and the policy. Through experiments on human object manipulation datasets, we show that our framework can efficiently transfer the expert human agent policy trained from human demonstrations in diverse modalities to target commercial robots.

Cross-view geo-localization aims to estimate the location of a query ground image by matching it to a reference geo-tagged aerial images database. As an extremely challenging task, its difficulties root in the drastic view changes and different capturing time between two views. Despite these difficulties, recent works achieve outstanding progress on cross-view geo-localization benchmarks. However, existing methods still suffer from poor performance on the cross-area benchmarks, in which the training and testing data are captured from two different regions. We attribute this deficiency to the lack of ability to extract the spatial configuration of visual feature layouts and models' overfitting on low-level details from the training set. In this paper, we propose GeoDTR which explicitly disentangles geometric information from raw features and learns the spatial correlations among visual features from aerial and ground pairs with a novel geometric layout extractor module. This module generates a set of geometric layout descriptors, modulating the raw features and producing high-quality latent representations. In addition, we elaborate on two categories of data augmentations, (i) Layout simulation, which varies the spatial configuration while keeping the low-level details intact. (ii) Semantic augmentation, which alters the low-level details and encourages the model to capture spatial configurations. These augmentations help to improve the performance of the cross-view geo-localization models, especially on the cross-area benchmarks. Moreover, we propose a counterfactual-based learning process to benefit the geometric layout extractor in exploring spatial information. Extensive experiments show that GeoDTR not only achieves state-of-the-art results but also significantly boosts the performance on same-area and cross-area benchmarks.

Recently, webly supervised learning (WSL) has been studied to leverage numerous and accessible data from the Internet. Most existing methods focus on learning noise-robust models from web images while neglecting the performance drop caused by the differences between web domain and real-world domain. However, only by tackling the performance gap above can we fully exploit the practical value of web datasets. To this end, we propose a Few-shot guided Prototypical (FoPro) representation learning method, which only needs a few labeled examples from reality and can significantly improve the performance in the real-world domain. Specifically, we initialize each class center with few-shot real-world data as the ``realistic" prototype. Then, the intra-class distance between web instances and ``realistic" prototypes is narrowed by contrastive learning. Finally, we measure image-prototype distance with a learnable metric. Prototypes are polished by adjacent high-quality web images and involved in removing distant out-of-distribution samples. In experiments, FoPro is trained on web datasets with a few real-world examples guided and evaluated on real-world datasets. Our method achieves the state-of-the-art performance on three fine-grained datasets and two large-scale datasets. Compared with existing WSL methods under the same few-shot settings, FoPro still excels in real-world generalization. Code is available at https://github.com/yuleiqin/fopro.

In this article, we use artificial intelligence algorithms to show how to enhance the resolution of the elementary particle track fitting in inhomogeneous dense detectors, such as plastic scintillators. We use deep learning to replace more traditional Bayesian filtering methods, drastically improving the reconstruction of the interacting particle kinematics. We show that a specific form of neural network, inherited from the field of natural language processing, is very close to the concept of a Bayesian filter that adopts a hyper-informative prior. Such a paradigm change can influence the design of future particle physics experiments and their data exploitation.

Providing accurate estimated time of package delivery on users' purchasing pages for e-commerce platforms is of great importance to their purchasing decisions and post-purchase experiences. Although this problem shares some common issues with the conventional estimated time of arrival (ETA), it is more challenging with the following aspects: 1) Inductive inference. Models are required to predict ETA for orders with unseen retailers and addresses; 2) High-order interaction of order semantic information. Apart from the spatio-temporal features, the estimated time also varies greatly with other factors, such as the packaging efficiency of retailers, as well as the high-order interaction of these factors. In this paper, we propose an inductive graph transformer (IGT) that leverages raw feature information and structural graph data to estimate package delivery time. Different from previous graph transformer architectures, IGT adopts a decoupled pipeline and trains transformer as a regression function that can capture the multiplex information from both raw feature and dense embeddings encoded by a graph neural network (GNN). In addition, we further simplify the GNN structure by removing its non-linear activation and the learnable linear transformation matrix. The reduced parameter search space and linear information propagation in the simplified GNN enable the IGT to be applied in large-scale industrial scenarios. Experiments on real-world logistics datasets show that our proposed model can significantly outperform the state-of-the-art methods on estimation of delivery time. The source code is available at: https://github.com/enoche/IGT-WSDM23.

Deep Neural Networks are vulnerable to adversarial attacks. Among many defense strategies, adversarial training with untargeted attacks is one of the most effective methods. Theoretically, adversarial perturbation in untargeted attacks can be added along arbitrary directions and the predicted labels of untargeted attacks should be unpredictable. However, we find that the naturally imbalanced inter-class semantic similarity makes those hard-class pairs become virtual targets of each other. This study investigates the impact of such closely-coupled classes on adversarial attacks and develops a self-paced reweighting strategy in adversarial training accordingly. Specifically, we propose to upweight hard-class pair losses in model optimization, which prompts learning discriminative features from hard classes. We further incorporate a term to quantify hard-class pair consistency in adversarial training, which greatly boosts model robustness. Extensive experiments show that the proposed adversarial training method achieves superior robustness performance over state-of-the-art defenses against a wide range of adversarial attacks.

Self-supervised monocular depth estimation (MDE) models universally suffer from the notorious edge-fattening issue. Triplet loss, as a widespread metric learning strategy, has largely succeeded in many computer vision applications. In this paper, we redesign the patch-based triplet loss in MDE to alleviate the ubiquitous edge-fattening issue. We show two drawbacks of the raw triplet loss in MDE and demonstrate our problem-driven redesigns. First, we present a min. operator based strategy applied to all negative samples, to prevent well-performing negatives sheltering the error of edge-fattening negatives. Second, we split the anchor-positive distance and anchor-negative distance from within the original triplet, which directly optimizes the positives without any mutual effect with the negatives. Extensive experiments show the combination of these two small redesigns can achieve unprecedented results: Our powerful and versatile triplet loss not only makes our model outperform all previous SoTA by a large margin, but also provides substantial performance boosts to a large number of existing models, while introducing no extra inference computation at all.