机器学习（ML）为生物处理工程的发展做出了重大贡献，但其应用仍然有限，阻碍了生物过程自动化的巨大潜力。用于模型构建自动化的ML可以看作是引入另一种抽象水平的一种方式，将专家的人类集中在生物过程开发的最认知任务中。首先，概率编程用于预测模型的自动构建。其次，机器学习会通过计划实验来测试假设并进行调查以收集信息性数据来自动评估替代决策，以收集基于模型预测不确定性的模型选择的信息数据。这篇评论提供了有关生物处理开发中基于ML的自动化的全面概述。一方面，生物技术和生物工程社区应意识到现有ML解决方案在生物技术和生物制药中的应用的限制。另一方面，必须确定缺失的链接，以使ML和人工智能（AI）解决方案轻松实施在有价值的生物社区解决方案中。我们总结了几个重要的生物处理系统的ML实施，并提出了两个至关重要的挑战，这些挑战仍然是生物技术自动化的瓶颈，并减少了生物技术开发的不确定性。没有一个合适的程序；但是，这项综述应有助于确定结合生物技术和ML领域的潜在自动化。

我们介绍了SubGD，这是一种新颖的几声学习方法，基于最近的发现，即随机梯度下降更新往往生活在低维参数子空间中。在实验和理论分析中，我们表明模型局限于合适的预定义子空间，可以很好地推广用于几次学习。合适的子空间符合给定任务的三个标准：IT（a）允许通过梯度流量减少训练误差，（b）导致模型良好的模型，并且（c）可以通过随机梯度下降来识别。 SUBGD从不同任务的更新说明的自动相关矩阵的特征组合中标识了这些子空间。明确的是，我们可以识别出低维合适的子空间，用于对动态系统的几次学习，而动态系统具有不同的属性，这些属性由分析系统描述的一个或几个参数描述。这种系统在科学和工程领域的现实应用程序中无处不在。我们在实验中证实了SubGD在三个不同的动态系统问题设置上的优势，在样本效率和性能方面，均超过了流行的几次学习方法。

联邦学习文学中的许多假设存在于最实际应用中不能满足的最佳情况。异步设置反映了逼真的环境，其中联合学习方法必须能够可靠地运行。除了参与者的不同数量的非IID数据之外，由于可用的计算电源和电池约束，异步设置模拟异构客户端参与，并且还考虑了客户端和服务器之间的延迟通信。为了减少与异步在线联合学习（ASO Fed）相关的通信开销，我们使用基于部分共享的通信的原则。以这种方式，我们减少了参与者的通信负载，因此，渲染参与学习任务更可访问。我们证明了拟议的ASO供给的融合并提供了进一步分析其行为的模拟。模拟显示，在异步设置中，可以实现与联邦随机梯度（在线FEDSGD）相同的收敛，同时减少通信十倍。

知识图中的节点是一个重要任务，例如，预测缺失类型的实体，预测哪些分子导致癌症，或预测哪种药物是有前途的治疗候选者。虽然黑匣子型号经常实现高预测性能，但它们只是hoc后和本地可解释的，并且不允许学习模型轻松丰富域知识。为此，已经提出了学习描述了来自正和否定示例的逻辑概念。然而，学习这种概念通常需要很长时间，最先进的方法为文字数据值提供有限的支持，尽管它们对于许多应用是至关重要的。在本文中，我们提出了Evolearner - 学习ALCQ（D）的进化方法，它是与合格基数限制（Q）和数据属性配对的补充（ALC）的定语语言和数据属性（D）。我们为初始群体贡献了一种新颖的初始化方法：从正示例开始（知识图中的节点），我们执行偏见随机散步并将它们转换为描述逻辑概念。此外，我们通过在决定分割数据的位置时，通过最大化信息增益来提高数据属性的支持。我们表明，我们的方法在结构化机器学习的基准框架SML - 台阶上显着优于现有技术。我们的消融研究证实，这是由于我们的新颖初始化方法和对数据属性的支持。

Diversity Searcher is a tool originally developed to help analyse diversity in news media texts. It relies on a form of automated content analysis and thus rests on prior assumptions and depends on certain design choices related to diversity and fairness. One such design choice is the external knowledge source(s) used. In this article, we discuss implications that these sources can have on the results of content analysis. We compare two data sources that Diversity Searcher has worked with - DBpedia and Wikidata - with respect to their ontological coverage and diversity, and describe implications for the resulting analyses of text corpora. We describe a case study of the relative over- or under-representation of Belgian political parties between 1990 and 2020 in the English-language DBpedia, the Dutch-language DBpedia, and Wikidata, and highlight the many decisions needed with regard to the design of this data analysis and the assumptions behind it, as well as implications from the results. In particular, we came across a staggering over-representation of the political right in the English-language DBpedia.

Artificial intelligence(AI) systems based on deep neural networks (DNNs) and machine learning (ML) algorithms are increasingly used to solve critical problems in bioinformatics, biomedical informatics, and precision medicine. However, complex DNN or ML models that are unavoidably opaque and perceived as black-box methods, may not be able to explain why and how they make certain decisions. Such black-box models are difficult to comprehend not only for targeted users and decision-makers but also for AI developers. Besides, in sensitive areas like healthcare, explainability and accountability are not only desirable properties of AI but also legal requirements -- especially when AI may have significant impacts on human lives. Explainable artificial intelligence (XAI) is an emerging field that aims to mitigate the opaqueness of black-box models and make it possible to interpret how AI systems make their decisions with transparency. An interpretable ML model can explain how it makes predictions and which factors affect the model's outcomes. The majority of state-of-the-art interpretable ML methods have been developed in a domain-agnostic way and originate from computer vision, automated reasoning, or even statistics. Many of these methods cannot be directly applied to bioinformatics problems, without prior customization, extension, and domain adoption. In this paper, we discuss the importance of explainability with a focus on bioinformatics. We analyse and comprehensively overview of model-specific and model-agnostic interpretable ML methods and tools. Via several case studies covering bioimaging, cancer genomics, and biomedical text mining, we show how bioinformatics research could benefit from XAI methods and how they could help improve decision fairness.

Kernel machines have sustained continuous progress in the field of quantum chemistry. In particular, they have proven to be successful in the low-data regime of force field reconstruction. This is because many physical invariances and symmetries can be incorporated into the kernel function to compensate for much larger datasets. So far, the scalability of this approach has however been hindered by its cubical runtime in the number of training points. While it is known, that iterative Krylov subspace solvers can overcome these burdens, they crucially rely on effective preconditioners, which are elusive in practice. Practical preconditioners need to be computationally efficient and numerically robust at the same time. Here, we consider the broad class of Nystr\"om-type methods to construct preconditioners based on successively more sophisticated low-rank approximations of the original kernel matrix, each of which provides a different set of computational trade-offs. All considered methods estimate the relevant subspace spanned by the kernel matrix columns using different strategies to identify a representative set of inducing points. Our comprehensive study covers the full spectrum of approaches, starting from naive random sampling to leverage score estimates and incomplete Cholesky factorizations, up to exact SVD decompositions.

We present an automatic method for annotating images of indoor scenes with the CAD models of the objects by relying on RGB-D scans. Through a visual evaluation by 3D experts, we show that our method retrieves annotations that are at least as accurate as manual annotations, and can thus be used as ground truth without the burden of manually annotating 3D data. We do this using an analysis-by-synthesis approach, which compares renderings of the CAD models with the captured scene. We introduce a 'cloning procedure' that identifies objects that have the same geometry, to annotate these objects with the same CAD models. This allows us to obtain complete annotations for the ScanNet dataset and the recent ARKitScenes dataset.

Objective: Imbalances of the electrolyte concentration levels in the body can lead to catastrophic consequences, but accurate and accessible measurements could improve patient outcomes. While blood tests provide accurate measurements, they are invasive and the laboratory analysis can be slow or inaccessible. In contrast, an electrocardiogram (ECG) is a widely adopted tool which is quick and simple to acquire. However, the problem of estimating continuous electrolyte concentrations directly from ECGs is not well-studied. We therefore investigate if regression methods can be used for accurate ECG-based prediction of electrolyte concentrations. Methods: We explore the use of deep neural networks (DNNs) for this task. We analyze the regression performance across four electrolytes, utilizing a novel dataset containing over 290000 ECGs. For improved understanding, we also study the full spectrum from continuous predictions to binary classification of extreme concentration levels. To enhance clinical usefulness, we finally extend to a probabilistic regression approach and evaluate different uncertainty estimates. Results: We find that the performance varies significantly between different electrolytes, which is clinically justified in the interplay of electrolytes and their manifestation in the ECG. We also compare the regression accuracy with that of traditional machine learning models, demonstrating superior performance of DNNs. Conclusion: Discretization can lead to good classification performance, but does not help solve the original problem of predicting continuous concentration levels. While probabilistic regression demonstrates potential practical usefulness, the uncertainty estimates are not particularly well-calibrated. Significance: Our study is a first step towards accurate and reliable ECG-based prediction of electrolyte concentration levels.

Earthquakes, fire, and floods often cause structural collapses of buildings. The inspection of damaged buildings poses a high risk for emergency forces or is even impossible, though. We present three recent selected missions of the Robotics Task Force of the German Rescue Robotics Center, where both ground and aerial robots were used to explore destroyed buildings. We describe and reflect the missions as well as the lessons learned that have resulted from them. In order to make robots from research laboratories fit for real operations, realistic test environments were set up for outdoor and indoor use and tested in regular exercises by researchers and emergency forces. Based on this experience, the robots and their control software were significantly improved. Furthermore, top teams of researchers and first responders were formed, each with realistic assessments of the operational and practical suitability of robotic systems.