我们提出了一种适用于半全球任务的自学学习（SSL）方法，例如对象检测和语义分割。我们通过在训练过程中最大程度地减少像素级局部对比度（LC）损失，代表了同一图像转换版本的相应图像位置之间的局部一致性。可以将LC-LOSS添加到以最小开销的现有自我监督学习方法中。我们使用可可，Pascal VOC和CityScapes数据集评估了两个下游任务的SSL方法 - 对象检测和语义细分。我们的方法的表现优于现有的最新SSL方法可可对象检测的方法1.9％，Pascal VOC检测1.4％，而CityScapes Sementation则为0.6％。

大多数现有的工作在几次学习中，依赖于Meta-Learning网络在大型基础数据集上，该网络通常是与目标数据集相同的域。我们解决了跨域几秒钟的问题，其中基础和目标域之间存在大移位。与未标记的目标数据的跨域几秒识别问题在很大程度上在文献中毫无根据。启动是使用自我训练解决此问题的第一个方法。但是，它使用固定的老师在标记的基础数据集上返回，以为未标记的目标样本创建软标签。由于基本数据集和未标记的数据集来自不同的域，因此将基本数据集的类域中的目标图像投影，具有固定的预制模型可能是子最优的。我们提出了一种简单的动态蒸馏基方法，以方便来自新颖/基础数据集的未标记图像。我们通过从教师网络中的未标记图像的未标记版本的预测计算并将其与来自学生网络相同的相同图像的强大版本匹配来施加一致性正常化。教师网络的参数被更新为学生网络参数的指数移动平均值。我们表明所提出的网络了解可以轻松适应目标域的表示，即使它尚未在预先预测阶段的目标专用类别训练。我们的车型优于当前最先进的方法，在BSCD-FSL基准中的5次分类，3.6％的3.6％，并在传统的域名几枪学习任务中显示出竞争性能。

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Since early in the coronavirus disease 2019 (COVID-19) pandemic, there has been interest in using artificial intelligence methods to predict COVID-19 infection status based on vocal audio signals, for example cough recordings. However, existing studies have limitations in terms of data collection and of the assessment of the performances of the proposed predictive models. This paper rigorously assesses state-of-the-art machine learning techniques used to predict COVID-19 infection status based on vocal audio signals, using a dataset collected by the UK Health Security Agency. This dataset includes acoustic recordings and extensive study participant meta-data. We provide guidelines on testing the performance of methods to classify COVID-19 infection status based on acoustic features and we discuss how these can be extended more generally to the development and assessment of predictive methods based on public health datasets.

Electronic Health Records (EHRs) hold detailed longitudinal information about each patient's health status and general clinical history, a large portion of which is stored within the unstructured text. Temporal modelling of this medical history, which considers the sequence of events, can be used to forecast and simulate future events, estimate risk, suggest alternative diagnoses or forecast complications. While most prediction approaches use mainly structured data or a subset of single-domain forecasts and outcomes, we processed the entire free-text portion of EHRs for longitudinal modelling. We present Foresight, a novel GPT3-based pipeline that uses NER+L tools (i.e. MedCAT) to convert document text into structured, coded concepts, followed by providing probabilistic forecasts for future medical events such as disorders, medications, symptoms and interventions. Since large portions of EHR data are in text form, such an approach benefits from a granular and detailed view of a patient while introducing modest additional noise. On tests in two large UK hospitals (King's College Hospital, South London and Maudsley) and the US MIMIC-III dataset precision@10 of 0.80, 0.81 and 0.91 was achieved for forecasting the next biomedical concept. Foresight was also validated on 34 synthetic patient timelines by 5 clinicians and achieved relevancy of 97% for the top forecasted candidate disorder. Foresight can be easily trained and deployed locally as it only requires free-text data (as a minimum). As a generative model, it can simulate follow-on disorders, medications and interventions for as many steps as required. Foresight is a general-purpose model for biomedical concept modelling that can be used for real-world risk estimation, virtual trials and clinical research to study the progression of diseases, simulate interventions and counterfactuals, and for educational purposes.

Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology.

The geospace environment is volatile and highly driven. Space weather has effects on Earth's magnetosphere that cause a dynamic and enigmatic response in the thermosphere, particularly on the evolution of neutral mass density. Many models exist that use space weather drivers to produce a density response, but these models are typically computationally expensive or inaccurate for certain space weather conditions. In response, this work aims to employ a probabilistic machine learning (ML) method to create an efficient surrogate for the Thermosphere Ionosphere Electrodynamics General Circulation Model (TIE-GCM), a physics-based thermosphere model. Our method leverages principal component analysis to reduce the dimensionality of TIE-GCM and recurrent neural networks to model the dynamic behavior of the thermosphere much quicker than the numerical model. The newly developed reduced order probabilistic emulator (ROPE) uses Long-Short Term Memory neural networks to perform time-series forecasting in the reduced state and provide distributions for future density. We show that across the available data, TIE-GCM ROPE has similar error to previous linear approaches while improving storm-time modeling. We also conduct a satellite propagation study for the significant November 2003 storm which shows that TIE-GCM ROPE can capture the position resulting from TIE-GCM density with < 5 km bias. Simultaneously, linear approaches provide point estimates that can result in biases of 7 - 18 km.

The SNMMI Artificial Intelligence (SNMMI-AI) Summit, organized by the SNMMI AI Task Force, took place in Bethesda, MD on March 21-22, 2022. It brought together various community members and stakeholders from academia, healthcare, industry, patient representatives, and government (NIH, FDA), and considered various key themes to envision and facilitate a bright future for routine, trustworthy use of AI in nuclear medicine. In what follows, essential issues, challenges, controversies and findings emphasized in the meeting are summarized.

Testing the significance of a variable or group of variables $X$ for predicting a response $Y$, given additional covariates $Z$, is a ubiquitous task in statistics. A simple but common approach is to specify a linear model, and then test whether the regression coefficient for $X$ is non-zero. However, when the model is misspecified, the test may have poor power, for example when $X$ is involved in complex interactions, or lead to many false rejections. In this work we study the problem of testing the model-free null of conditional mean independence, i.e. that the conditional mean of $Y$ given $X$ and $Z$ does not depend on $X$. We propose a simple and general framework that can leverage flexible nonparametric or machine learning methods, such as additive models or random forests, to yield both robust error control and high power. The procedure involves using these methods to perform regressions, first to estimate a form of projection of $Y$ on $X$ and $Z$ using one half of the data, and then to estimate the expected conditional covariance between this projection and $Y$ on the remaining half of the data. While the approach is general, we show that a version of our procedure using spline regression achieves what we show is the minimax optimal rate in this nonparametric testing problem. Numerical experiments demonstrate the effectiveness of our approach both in terms of maintaining Type I error control, and power, compared to several existing approaches.

当植物天然产物与药物共容纳时，就会发生药代动力学天然产物 - 药物相互作用（NPDIS）。了解NPDI的机制是防止不良事件的关键。我们构建了一个知识图框架NP-KG，作为迈向药代动力学NPDIS的计算发现的一步。 NP-KG是一个具有生物医学本体论，链接数据和科学文献的全文，由表型知识翻译框架和语义关系提取系统，SEMREP和集成网络和动态推理组成的构建的科学文献的全文。通过路径搜索和元路径发现对药代动力学绿茶和kratom-prug相互作用的案例研究评估NP-KG，以确定与地面真实数据相比的一致性和矛盾信息。完全集成的NP-KG由745,512个节点和7,249,576个边缘组成。 NP-KG的评估导致了一致（绿茶的38.98％，kratom的50％），矛盾（绿茶的15.25％，21.43％，Kratom的21.43％），同等和矛盾的（15.25％）（21.43％，21.43％，21.43％ kratom）信息。几种声称的NPDI的潜在药代动力学机制，包括绿茶 - 茶氧化烯，绿茶 - 纳多洛尔，Kratom-Midazolam，Kratom-Quetiapine和Kratom-Venlafaxine相互作用，与已出版的文献一致。 NP-KG是第一个将生物医学本体论与专注于天然产品的科学文献的全文相结合的公斤。我们证明了NP-KG在鉴定涉及酶，转运蛋白和药物的药代动力学相互作用的应用。我们设想NP-KG将有助于改善人机合作，以指导研究人员将来对药代动力学NPDIS进行研究。 NP-KG框架可在https://doi.org/10.5281/zenodo.6814507和https://github.com/sanyabt/np-kg上公开获得。