The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.
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Incorporating computed tomography (CT) reconstruction operators into differentiable pipelines has proven beneficial in many applications. Such approaches usually focus on the projection data and keep the acquisition geometry fixed. However, precise knowledge of the acquisition geometry is essential for high quality reconstruction results. In this paper, the differentiable formulation of fan-beam CT reconstruction is extended to the acquisition geometry. This allows to propagate gradient information from a loss function on the reconstructed image into the geometry parameters. As a proof-of-concept experiment, this idea is applied to rigid motion compensation. The cost function is parameterized by a trained neural network which regresses an image quality metric from the motion affected reconstruction alone. Using the proposed method, we are the first to optimize such an autofocus-inspired algorithm based on analytical gradients. The algorithm achieves a reduction in MSE by 35.5 % and an improvement in SSIM by 12.6 % over the motion affected reconstruction. Next to motion compensation, we see further use cases of our differentiable method for scanner calibration or hybrid techniques employing deep models.
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语言模型预训练的最新进展利用大规模数据集创建多语言模型。但是,这些数据集中大多遗漏了低资源语言。这主要是因为网络上没有很好地表示口语,因此被排除在用于创建数据集的大规模爬网中。此外,这些模型的下游用户仅限于最初选择用于预训练的语言的选择。这项工作调查了如何最佳利用现有的预培训模型来为16种非洲语言创建低资源翻译系统。我们关注两个问题:1)如何将预训练的模型用于初始预培训中未包含的语言? 2)生成的翻译模型如何有效地转移到新域?为了回答这些问题,我们创建了一个新的非洲新闻语料库,涵盖16种语言,其中8种语言不属于任何现有评估数据集的一部分。我们证明,将两种语言转移到其他语言和其他领域的最有效策略是,以少量的高质量翻译数据微调大型预训练模型。
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深度学习(DL)模型为各种医学成像基准挑战提供了最先进的性能,包括脑肿瘤细分(BRATS)挑战。然而,局灶性病理多隔室分割(例如,肿瘤和病变子区)的任务特别具有挑战性,并且潜在的错误阻碍DL模型转化为临床工作流程。量化不确定形式的DL模型预测的可靠性,可以实现最不确定的地区的临床审查,从而建立信任并铺平临床翻译。最近,已经引入了许多不确定性估计方法,用于DL医学图像分割任务。开发指标评估和比较不确定性措施的表现将有助于最终用户制定更明智的决策。在本研究中,我们探索并评估在Brats 2019-2020任务期间开发的公制,以对不确定量化量化(Qu-Brats),并旨在评估和排列脑肿瘤多隔室分割的不确定性估计。该公制(1)奖励不确定性估计,对正确断言产生高置信度,以及在不正确的断言处分配低置信水平的估计数,(2)惩罚导致更高百分比的无关正确断言百分比的不确定性措施。我们进一步基准测试由14个独立参与的Qu-Brats 2020的分割不确定性,所有这些都参与了主要的Brats细分任务。总体而言,我们的研究结果证实了不确定性估计提供了分割算法的重要性和互补价值,因此突出了医学图像分析中不确定性量化的需求。我们的评估代码在HTTPS://github.com/ragmeh11/qu-brats公开提供。
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成语与大多数短语不同。首先,成语中的单词具有非规范含义。其次,习语中单词的非传统含义取决于习惯中其他单词的存在。语言理论在这些特性是否相互依赖,以及是否需要特殊的理论机制来容纳成语方面有所不同。我们定义了与上述属性相对应的两个度量,并使用BERT(Devlin等,2019)和XLNet实施它们(Yang等,2019)。我们表明,成语落在两个维度的预期交集处,但是尺寸本身并不相关。我们的结果表明,处理习语的特殊机械可能不保证。
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背景:虽然卷积神经网络(CNN)实现了检测基于磁共振成像(MRI)扫描的阿尔茨海默病(AD)痴呆的高诊断准确性,但它们尚未应用于临床常规。这是一个重要原因是缺乏模型可理解性。最近开发的用于导出CNN相关性图的可视化方法可能有助于填补这种差距。我们调查了具有更高准确性的模型还依赖于先前知识预定义的判别脑区域。方法:我们培训了CNN,用于检测痴呆症和Amnestic认知障碍(MCI)患者的N = 663 T1加权MRI扫描的AD,并通过交叉验证和三个独立样本验证模型的准确性= 1655例。我们评估了相关评分和海马体积的关联,以验证这种方法的临床效用。为了提高模型可理解性,我们实现了3D CNN相关性图的交互式可视化。结果:跨三个独立数据集,组分离表现出广告痴呆症与控制的高精度(AUC $ \ GEQUQ $ 0.92)和MCI与控制的中等精度(AUC $ \约0.75美元)。相关性图表明海马萎缩被认为是广告检测的最具信息性因素,其其他皮质和皮质区域中的萎缩额外贡献。海马内的相关评分与海马体积高度相关(Pearson的r $ \大约$ -0.86,p <0.001)。结论:相关性地图突出了我们假设先验的地区的萎缩。这加强了CNN模型的可理解性,这些模型基于扫描和诊断标签以纯粹的数据驱动方式培训。
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Dataset distillation has emerged as a prominent technique to improve data efficiency when training machine learning models. It encapsulates the knowledge from a large dataset into a smaller synthetic dataset. A model trained on this smaller distilled dataset can attain comparable performance to a model trained on the original training dataset. However, the existing dataset distillation techniques mainly aim at achieving the best trade-off between resource usage efficiency and model utility. The security risks stemming from them have not been explored. This study performs the first backdoor attack against the models trained on the data distilled by dataset distillation models in the image domain. Concretely, we inject triggers into the synthetic data during the distillation procedure rather than during the model training stage, where all previous attacks are performed. We propose two types of backdoor attacks, namely NAIVEATTACK and DOORPING. NAIVEATTACK simply adds triggers to the raw data at the initial distillation phase, while DOORPING iteratively updates the triggers during the entire distillation procedure. We conduct extensive evaluations on multiple datasets, architectures, and dataset distillation techniques. Empirical evaluation shows that NAIVEATTACK achieves decent attack success rate (ASR) scores in some cases, while DOORPING reaches higher ASR scores (close to 1.0) in all cases. Furthermore, we conduct a comprehensive ablation study to analyze the factors that may affect the attack performance. Finally, we evaluate multiple defense mechanisms against our backdoor attacks and show that our attacks can practically circumvent these defense mechanisms.
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We present a dynamic path planning algorithm to navigate an amphibious rotor craft through a concave time-invariant obstacle field while attempting to minimize energy usage. We create a nonlinear quaternion state model that represents the rotor craft dynamics above and below the water. The 6 degree of freedom dynamics used within a layered architecture to generate motion paths for the vehicle to follow and the required control inputs. The rotor craft has a 3 dimensional map of its surroundings that is updated via limited range onboard sensor readings within the current medium (air or water). Path planning is done via PRM and D* Lite.
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While the capabilities of autonomous systems have been steadily improving in recent years, these systems still struggle to rapidly explore previously unknown environments without the aid of GPS-assisted navigation. The DARPA Subterranean (SubT) Challenge aimed to fast track the development of autonomous exploration systems by evaluating their performance in real-world underground search-and-rescue scenarios. Subterranean environments present a plethora of challenges for robotic systems, such as limited communications, complex topology, visually-degraded sensing, and harsh terrain. The presented solution enables long-term autonomy with minimal human supervision by combining a powerful and independent single-agent autonomy stack, with higher level mission management operating over a flexible mesh network. The autonomy suite deployed on quadruped and wheeled robots was fully independent, freeing the human supervision to loosely supervise the mission and make high-impact strategic decisions. We also discuss lessons learned from fielding our system at the SubT Final Event, relating to vehicle versatility, system adaptability, and re-configurable communications.
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We present Muse, a text-to-image Transformer model that achieves state-of-the-art image generation performance while being significantly more efficient than diffusion or autoregressive models. Muse is trained on a masked modeling task in discrete token space: given the text embedding extracted from a pre-trained large language model (LLM), Muse is trained to predict randomly masked image tokens. Compared to pixel-space diffusion models, such as Imagen and DALL-E 2, Muse is significantly more efficient due to the use of discrete tokens and requiring fewer sampling iterations; compared to autoregressive models, such as Parti, Muse is more efficient due to the use of parallel decoding. The use of a pre-trained LLM enables fine-grained language understanding, translating to high-fidelity image generation and the understanding of visual concepts such as objects, their spatial relationships, pose, cardinality etc. Our 900M parameter model achieves a new SOTA on CC3M, with an FID score of 6.06. The Muse 3B parameter model achieves an FID of 7.88 on zero-shot COCO evaluation, along with a CLIP score of 0.32. Muse also directly enables a number of image editing applications without the need to fine-tune or invert the model: inpainting, outpainting, and mask-free editing. More results are available at https://muse-model.github.io
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