In the process of materials discovery, chemists currently need to perform many laborious, time-consuming, and often dangerous lab experiments. To accelerate this process, we propose a framework for robots to assist chemists by performing lab experiments autonomously. The solution allows a general-purpose robot to perform diverse chemistry experiments and efficiently make use of available lab tools. Our system can load high-level descriptions of chemistry experiments, perceive a dynamic workspace, and autonomously plan the required actions and motions to perform the given chemistry experiments with common tools found in the existing lab environment. Our architecture uses a modified PDDLStream solver for integrated task and constrained motion planning, which generates plans and motions that are guaranteed to be safe by preventing collisions and spillage. We present a modular framework that can scale to many different experiments, actions, and lab tools. In this work, we demonstrate the utility of our framework on three pouring skills and two foundational chemical experiments for materials synthesis: solubility and recrystallization. More experiments and updated evaluations can be found at https://ac-rad.github.io/arc-icra2023.
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Deep learning models that leverage large datasets are often the state of the art for modelling molecular properties. When the datasets are smaller (< 2000 molecules), it is not clear that deep learning approaches are the right modelling tool. In this work we perform an extensive study of the calibration and generalizability of probabilistic machine learning models on small chemical datasets. Using different molecular representations and models, we analyse the quality of their predictions and uncertainties in a variety of tasks (binary, regression) and datasets. We also introduce two simulated experiments that evaluate their performance: (1) Bayesian optimization guided molecular design, (2) inference on out-of-distribution data via ablated cluster splits. We offer practical insights into model and feature choice for modelling small chemical datasets, a common scenario in new chemical experiments. We have packaged our analysis into the DIONYSUS repository, which is open sourced to aid in reproducibility and extension to new datasets.
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We present MatSim: a synthetic dataset, a benchmark, and a method for computer vision based recognition of similarities and transitions between materials and textures, focusing on identifying any material under any conditions using one or a few examples (one-shot learning). The visual recognition of materials is essential to everything from examining food while cooking to inspecting agriculture, chemistry, and industrial products. In this work, we utilize giant repositories used by computer graphics artists to generate a new CGI dataset for material similarity. We use physics-based rendering (PBR) repositories for visual material simulation, assign these materials random 3D objects, and render images with a vast range of backgrounds and illumination conditions (HDRI). We add a gradual transition between materials to support applications with a smooth transition between states (like gradually cooked food). We also render materials inside transparent containers to support beverage and chemistry lab use cases. We then train a contrastive learning network to generate a descriptor that identifies unfamiliar materials using a single image. We also present a new benchmark for a few-shot material recognition that contains a wide range of real-world examples, including the state of a chemical reaction, rotten/fresh fruits, states of food, different types of construction materials, types of ground, and many other use cases involving material states, transitions and subclasses. We show that a network trained on the MatSim synthetic dataset outperforms state-of-the-art models like Clip on the benchmark, despite being tested on material classes that were not seen during training. The dataset, benchmark, code and trained models are available online.
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我们存在从单个图像预测材料,液体和物体的3D结构,掩模和物体的3D结构,掩模和物体的方法,而无需先验地了解图像源和相机参数。透明容器中的操纵材料在许多领域是必不可少的,并且依赖视力。这项工作提供了一种新的程序生成的数据集,由透明容器内的液体和固体物体的50k图像组成。图像注释包括3D模型,材料属性(颜色/透明度/粗糙度......)以及船舶的分段掩模及其内容。使用13K不同的物体,500种不同的环境(HDRI)和1450种材料纹理(PBR)与模拟液体和程序生成的容器组合的合成(CGI)部分。此外,我们还提供104个现实世界的物体图像,内部透明船只与船舶的深度图及其内容。我们提出了一种相机不可知论方法,其从图像中预测3D模型作为XYZ地图。这允许训练的网络将3D模型预测为每个像素的XYZ坐标的地图,而无需先验到图像源。为了计算训练损失,我们使用3D模型内的点对之间的距离而不是绝对XYZ坐标。这使得损失函数翻译不变。我们使用它来预测从单个图像预测血管的3D模型及其内容。最后,我们展示了一种使用单个图像来预测血管含量和表面的材料特性的网络。
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量子物理实验产生有趣的现象,例如干扰或纠缠,这些现象是许多未来量子技术的核心特性。量子实验的设置结构与其纠缠特性之间的复杂关系对于量子光学的基本研究至关重要,但很难直观地理解。我们提出了量子光学实验的深层生成模型,其中在量子光学实验设置的数据集中对变异自动编码器进行了训练。在一系列计算实验中,我们研究了我们的量子光学变量自动编码器(Qovae)的学识渊博表示及其对量子光学世界的内部理解。我们证明Qovae学习了量子光学实验的可解释表示以及实验结构与纠缠之间的关系。我们显示,Qovae能够为高度纠缠的量子状态生成具有匹配其训练数据的特定分布的新型实验。 Qovae可以学会生成特定的纠缠状态,并有效地搜索产生高度纠缠量子状态的实验空间。重要的是,我们能够解释Qovae如何结构其潜在空间,从而找到可以从量子物理学来解释的好奇模式。结果表明,我们如何在复杂的科学领域中使用和理解深层生成模型的内部表示。 Qovae和我们调查的见解可以立即应用于其他物理系统。
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An increasing number of public datasets have shown a marked clinical impact on assessing anatomical structures. However, each of the datasets is small, partially labeled, and rarely investigates severe tumor subjects. Moreover, current models are limited to segmenting specific organs/tumors, which can not be extended to novel domains and classes. To tackle these limitations, we introduce embedding learned from Contrastive Language-Image Pre-training (CLIP) to segmentation models, dubbed the CLIP-Driven Universal Model. The Universal Model can better segment 25 organs and 6 types of tumors by exploiting the semantic relationship between abdominal structures. The model is developed from an assembly of 14 datasets with 3,410 CT scans and evaluated on 6,162 external CT scans from 3 datasets. We rank first on the public leaderboard of the Medical Segmentation Decathlon (MSD) and achieve the state-of-the-art results on Beyond The Cranial Vault (BTCV). Compared with dataset-specific models, the Universal Model is computationally more efficient (6x faster), generalizes better to CT scans from varying sites, and shows stronger transfer learning performance on novel tasks. The design of CLIP embedding enables the Universal Model to be easily extended to new classes without catastrophically forgetting the previously learned classes.
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In this work, we tackle two vital tasks in automated driving systems, i.e., driver intent prediction and risk object identification from egocentric images. Mainly, we investigate the question: what would be good road scene-level representations for these two tasks? We contend that a scene-level representation must capture higher-level semantic and geometric representations of traffic scenes around ego-vehicle while performing actions to their destinations. To this end, we introduce the representation of semantic regions, which are areas where ego-vehicles visit while taking an afforded action (e.g., left-turn at 4-way intersections). We propose to learn scene-level representations via a novel semantic region prediction task and an automatic semantic region labeling algorithm. Extensive evaluations are conducted on the HDD and nuScenes datasets, and the learned representations lead to state-of-the-art performance for driver intention prediction and risk object identification.
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Large language models (LLMs) have demonstrated impressive capabilities in natural language understanding and generation, but the quality bar for medical and clinical applications is high. Today, attempts to assess models' clinical knowledge typically rely on automated evaluations on limited benchmarks. There is no standard to evaluate model predictions and reasoning across a breadth of tasks. To address this, we present MultiMedQA, a benchmark combining six existing open question answering datasets spanning professional medical exams, research, and consumer queries; and HealthSearchQA, a new free-response dataset of medical questions searched online. We propose a framework for human evaluation of model answers along multiple axes including factuality, precision, possible harm, and bias. In addition, we evaluate PaLM (a 540-billion parameter LLM) and its instruction-tuned variant, Flan-PaLM, on MultiMedQA. Using a combination of prompting strategies, Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset (MedQA, MedMCQA, PubMedQA, MMLU clinical topics), including 67.6% accuracy on MedQA (US Medical License Exam questions), surpassing prior state-of-the-art by over 17%. However, human evaluation reveals key gaps in Flan-PaLM responses. To resolve this we introduce instruction prompt tuning, a parameter-efficient approach for aligning LLMs to new domains using a few exemplars. The resulting model, Med-PaLM, performs encouragingly, but remains inferior to clinicians. We show that comprehension, recall of knowledge, and medical reasoning improve with model scale and instruction prompt tuning, suggesting the potential utility of LLMs in medicine. Our human evaluations reveal important limitations of today's models, reinforcing the importance of both evaluation frameworks and method development in creating safe, helpful LLM models for clinical applications.
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This paper presents a simple and effective visual prompting method for adapting pre-trained models to downstream recognition tasks. Our method includes two key designs. First, rather than directly adding together the prompt and the image, we treat the prompt as an extra and independent learnable component. We show that the strategy of reconciling the prompt and the image matters, and find that warping the prompt around a properly shrinked image empirically works the best. Second, we re-introduce two "old tricks" commonly used in building transferable adversarial examples, i.e., input diversity and gradient normalization, into visual prompting. These techniques improve optimization and enable the prompt to generalize better. We provide extensive experimental results to demonstrate the effectiveness of our method. Using a CLIP model, our prompting method sets a new record of 82.8% average accuracy across 12 popular classification datasets, substantially surpassing the prior art by +5.6%. It is worth noting that this prompting performance already outperforms linear probing by +2.1% and can even match fully fine-tuning in certain datasets. In addition, our prompting method shows competitive performance across different data scales and against distribution shifts. The code is publicly available at https://github.com/UCSC-VLAA/EVP.
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Named Entity Recognition (NER) is an important and well-studied task in natural language processing. The classic CoNLL-2003 English dataset, published almost 20 years ago, is commonly used to train and evaluate named entity taggers. The age of this dataset raises the question of how well these models perform when applied to modern data. In this paper, we present CoNLL++, a new annotated test set that mimics the process used to create the original CoNLL-2003 test set as closely as possible, except with data collected from 2020. Using CoNLL++, we evaluate the generalization of 20+ different models to modern data. We observe that different models have very different generalization behavior. F\textsubscript{1} scores of large transformer-based models which are pre-trained on recent data dropped much less than models using static word embeddings, and RoBERTa-based and T5 models achieve comparable F\textsubscript{1} scores on both CoNLL-2003 and CoNLL++. Our experiments show that achieving good generalizability requires a combined effort of developing larger models and continuing pre-training with in-domain and recent data. These results suggest standard evaluation methodology may have under-estimated progress on named entity recognition over the past 20 years; in addition to improving performance on the original CoNLL-2003 dataset, we have also improved the ability of our models to generalize to modern data.
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