病毒感染导致全世界的显着发病率和死亡率。理解特定病毒和人类蛋白质之间的相互作用模式在揭示病毒感染和发病机制的潜在机制方面发挥着至关重要的作用。这可以进一步帮助预防和治疗病毒相关疾病。然而,由于病毒 - 人类相互作用的稀缺数据和大多数病毒的快速突变率,预测新病毒和人体细胞之间的蛋白质 - 蛋白质相互作用的任务是非常挑战性的。我们开发了一种多任务转移学习方法,利用人类互乱组约2400万蛋白序列和相互作用模式的信息来解决小型训练数据集的问题。除了使用手工制作的蛋白质特征,而不是通过深语模型方法从巨大的蛋白质序列来源学习的统计学上丰富的蛋白质表示。此外,我们采用了额外的目的,旨在最大限度地提高观察人蛋白质蛋白质相互作用的可能性。这一附加任务目标充当规律器,还允许纳入域知识来告知病毒 - 人蛋白质 - 蛋白质相互作用预测模型。我们的方法在13个基准数据集中实现了竞争力,以及SAR-COV-2病毒受体的案例研究。实验结果表明,我们所提出的模型有效地用于病毒 - 人和细菌 - 人蛋白质 - 蛋白质 - 蛋白质相互作用预测任务。我们分享我们的重复性和未来研究代码,以便在https://git.l3s.uni-hannover.de/dong/multitastastastastastastastastastask-transfer。
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Contrastive learning has been successfully used for retrieval of semantically aligned sentences, but it often requires large batch sizes or careful engineering to work well. In this paper, we instead propose a generative model for learning multilingual text embeddings which can be used to retrieve or score sentence pairs. Our model operates on parallel data in $N$ languages and, through an approximation we introduce, efficiently encourages source separation in this multilingual setting, separating semantic information that is shared between translations from stylistic or language-specific variation. We show careful large-scale comparisons between contrastive and generation-based approaches for learning multilingual text embeddings, a comparison that has not been done to the best of our knowledge despite the popularity of these approaches. We evaluate this method on a suite of tasks including semantic similarity, bitext mining, and cross-lingual question retrieval -- the last of which we introduce in this paper. Overall, our Variational Multilingual Source-Separation Transformer (VMSST) model outperforms both a strong contrastive and generative baseline on these tasks.
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To extend the scope of coding queries to more realistic settings, we propose ODEX, the first open-domain execution-based natural language (NL) to code generation dataset. ODEX has 945 NL-Code pairs spanning 79 diverse libraries, along with 1,707 human-written test cases for execution. Our NL-Code pairs are harvested from StackOverflow forums to encourage natural and practical coding queries, which are then carefully rephrased to ensure intent clarity and prevent potential data memorization. Moreover, ODEX supports four natural languages as intents, in English, Spanish, Japanese, and Russian. ODEX unveils intriguing behavioral differences between top-performing Code LMs: Codex performs better on open-domain queries, yet CodeGen captures a better balance between open- and closed-domain. ODEX corroborates the merits of execution-based evaluation over metrics without execution but also unveils their complementary effects. Powerful models such as CodeGen-6B only achieve an 11.96 pass rate at top-1 prediction, suggesting plenty of headroom for improvement. We release ODEX to facilitate research into open-domain problems for the code generation community.
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Psychology research has long explored aspects of human personality such as extroversion, agreeableness and emotional stability. Categorizations like the `Big Five' personality traits are commonly used to assess and diagnose personality types. In this work, we explore the question of whether the perceived personality in language models is exhibited consistently in their language generation. For example, is a language model such as GPT2 likely to respond in a consistent way if asked to go out to a party? We also investigate whether such personality traits can be controlled. We show that when provided different types of contexts (such as personality descriptions, or answers to diagnostic questions about personality traits), language models such as BERT and GPT2 can consistently identify and reflect personality markers in those contexts. This behavior illustrates an ability to be manipulated in a highly predictable way, and frames them as tools for identifying personality traits and controlling personas in applications such as dialog systems. We also contribute a crowd-sourced data-set of personality descriptions of human subjects paired with their `Big Five' personality assessment data, and a data-set of personality descriptions collated from Reddit.
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We present NusaCrowd, a collaborative initiative to collect and unite existing resources for Indonesian languages, including opening access to previously non-public resources. Through this initiative, we have has brought together 137 datasets and 117 standardized data loaders. The quality of the datasets has been assessed manually and automatically, and their effectiveness has been demonstrated in multiple experiments. NusaCrowd's data collection enables the creation of the first zero-shot benchmarks for natural language understanding and generation in Indonesian and its local languages. Furthermore, NusaCrowd brings the creation of the first multilingual automatic speech recognition benchmark in Indonesian and its local languages. Our work is intended to help advance natural language processing research in under-represented languages.
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As part of the MediaEval 2022 Predicting Video Memorability task we explore the relationship between visual memorability, the visual representation that characterises it, and the underlying concept portrayed by that visual representation. We achieve state-of-the-art memorability prediction performance with a model trained and tested exclusively on surrogate dream images, elevating concepts to the status of a cornerstone memorability feature, and finding strong evidence to suggest that the intrinsic memorability of visual content can be distilled to its underlying concept or meaning irrespective of its specific visual representational.
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User and product information associated with a review is useful for sentiment polarity prediction. Typical approaches incorporating such information focus on modeling users and products as implicitly learned representation vectors. Most do not exploit the potential of historical reviews, or those that currently do require unnecessary modifications to model architecture or do not make full use of user/product associations. The contribution of this work is twofold: i) a method to explicitly employ historical reviews belonging to the same user/product to initialize representations, and ii) efficient incorporation of textual associations between users and products via a user-product cross-context module. Experiments on IMDb, Yelp-2013 and Yelp-2014 benchmarks show that our approach substantially outperforms previous state-of-the-art. Since we employ BERT-base as the encoder, we additionally provide experiments in which our approach performs well with Span-BERT and Longformer. Furthermore, experiments where the reviews of each user/product in the training data are downsampled demonstrate the effectiveness of our approach under a low-resource setting.
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This paper describes the 5th edition of the Predicting Video Memorability Task as part of MediaEval2022. This year we have reorganised and simplified the task in order to lubricate a greater depth of inquiry. Similar to last year, two datasets are provided in order to facilitate generalisation, however, this year we have replaced the TRECVid2019 Video-to-Text dataset with the VideoMem dataset in order to remedy underlying data quality issues, and to prioritise short-term memorability prediction by elevating the Memento10k dataset as the primary dataset. Additionally, a fully fledged electroencephalography (EEG)-based prediction sub-task is introduced. In this paper, we outline the core facets of the task and its constituent sub-tasks; describing the datasets, evaluation metrics, and requirements for participant submissions.
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Recently, a large number of tuning strategies have been proposed to adapt pre-trained language models to downstream tasks. In this paper, we perform an extensive empirical evaluation of various tuning strategies for multilingual learning, particularly in the context of text summarization. Specifically, we explore the relative advantages of three families of multilingual tuning strategies (a total of five models) and empirically evaluate them for summarization over 45 languages. Experimentally, we not only established a new state-of-the-art on the XL-Sum dataset but also derive a series of observations that hopefully can provide hints for future research on the design of multilingual tuning strategies.
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Modern embedding-based metrics for evaluation of generated text generally fall into one of two paradigms: discriminative metrics that are trained to directly predict which outputs are of higher quality according to supervised human annotations, and generative metrics that are trained to evaluate text based on the probabilities of a generative model. Both have their advantages; discriminative metrics are able to directly optimize for the problem of distinguishing between good and bad outputs, while generative metrics can be trained using abundant raw text. In this paper, we present a framework that combines the best of both worlds, using both supervised and unsupervised signals from whatever data we have available. We operationalize this idea by training T5Score, a metric that uses these training signals with mT5 as the backbone. We perform an extensive empirical comparison with other existing metrics on 5 datasets, 19 languages and 280 systems, demonstrating the utility of our method. Experimental results show that: T5Score achieves the best performance on all datasets against existing top-scoring metrics at the segment level. We release our code and models at https://github.com/qinyiwei/T5Score.
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