Vision Transformers have shown great promise recently for many vision tasks due to the insightful architecture design and attention mechanism. By revisiting the self-attention responses in Transformers, we empirically observe two interesting issues. First, Vision Transformers present a queryirrelevant behavior at deep layers, where the attention maps exhibit nearly consistent contexts in global scope, regardless of the query patch position (also head-irrelevant). Second, the attention maps are intrinsically sparse, few tokens dominate the attention weights; introducing the knowledge from ConvNets would largely smooth the attention and enhance the performance. Motivated by above observations, we generalize self-attention formulation to abstract a queryirrelevant global context directly and further integrate the global context into convolutions. The resulting model, a Fully Convolutional Vision Transformer (i.e., FCViT), purely consists of convolutional layers and firmly inherits the merits of both attention mechanism and convolutions, including dynamic property, weight sharing, and short- and long-range feature modeling, etc. Experimental results demonstrate the effectiveness of FCViT. With less than 14M parameters, our FCViT-S12 outperforms related work ResT-Lite by 3.7% top1 accuracy on ImageNet-1K. When scaling FCViT to larger models, we still perform better than previous state-of-the-art ConvNeXt with even fewer parameters. FCViT-based models also demonstrate promising transferability to downstream tasks, like object detection, instance segmentation, and semantic segmentation. Codes and models are made available at: https://github.com/ma-xu/FCViT.

Large pretrained language models have shown surprising In-Context Learning (ICL) ability. With a few demonstration input-label pairs, they can predict the label for an unseen input without additional parameter updates. Despite the great success in performance, the working mechanism of ICL still remains an open problem. In order to better understand how ICL works, this paper explains language models as meta-optimizers and understands ICL as a kind of implicit finetuning. Theoretically, we figure out that the Transformer attention has a dual form of gradient descent based optimization. On top of it, we understand ICL as follows: GPT first produces meta-gradients according to the demonstration examples, and then these meta-gradients are applied to the original GPT to build an ICL model. Experimentally, we comprehensively compare the behavior of ICL and explicit finetuning based on real tasks to provide empirical evidence that supports our understanding. The results prove that ICL behaves similarly to explicit finetuning at the prediction level, the representation level, and the attention behavior level. Further, inspired by our understanding of meta-optimization, we design a momentum-based attention by analogy with the momentum-based gradient descent algorithm. Its consistently better performance over vanilla attention supports our understanding again from another aspect, and more importantly, it shows the potential to utilize our understanding for future model designing.

Deep learning networks have demonstrated state-of-the-art performance on medical image analysis tasks. However, the majority of the works rely heavily on abundantly labeled data, which necessitates extensive involvement of domain experts. Vision transformer (ViT) based generative adversarial networks (GANs) recently demonstrated superior potential in general image synthesis, yet are less explored for histopathology images. In this paper, we address these challenges by proposing a pure ViT-based conditional GAN model for histopathology image synthetic augmentation. To alleviate training instability and improve generation robustness, we first introduce a conditioned class projection method to facilitate class separation. We then implement a multi-loss weighing function to dynamically balance the losses between classification tasks. We further propose a selective augmentation mechanism to actively choose the appropriate generated images and bring additional performance improvements. Extensive experiments on the histopathology datasets show that leveraging our synthetic augmentation framework results in significant and consistent improvements in classification performance.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

The success of deep learning heavily relies on large-scale data with comprehensive labels, which is more expensive and time-consuming to fetch in 3D compared to 2D images or natural languages. This promotes the potential of utilizing models pretrained with data more than 3D as teachers for cross-modal knowledge transferring. In this paper, we revisit masked modeling in a unified fashion of knowledge distillation, and we show that foundational Transformers pretrained with 2D images or natural languages can help self-supervised 3D representation learning through training Autoencoders as Cross-Modal Teachers (ACT). The pretrained Transformers are transferred as cross-modal 3D teachers using discrete variational autoencoding self-supervision, during which the Transformers are frozen with prompt tuning for better knowledge inheritance. The latent features encoded by the 3D teachers are used as the target of masked point modeling, wherein the dark knowledge is distilled to the 3D Transformer students as foundational geometry understanding. Our ACT pretrained 3D learner achieves state-of-the-art generalization capacity across various downstream benchmarks, e.g., 88.21% overall accuracy on ScanObjectNN. Codes will be released at https://github.com/RunpeiDong/ACT.

How can we extend a pre-trained model to many language understanding tasks, without labeled or additional unlabeled data? Pre-trained language models (PLMs) have been effective for a wide range of NLP tasks. However, existing approaches either require fine-tuning on downstream labeled datasets or manually constructing proper prompts. In this paper, we propose nonparametric prompting PLM (NPPrompt) for fully zero-shot language understanding. Unlike previous methods, NPPrompt uses only pre-trained language models and does not require any labeled data or additional raw corpus for further fine-tuning, nor does it rely on humans to construct a comprehensive set of prompt label words. We evaluate NPPrompt against previous major few-shot and zero-shot learning methods on diverse NLP tasks: including text classification, text entailment, similar text retrieval, and paraphrasing. Experimental results demonstrate that our NPPrompt outperforms the previous best fully zero-shot method by big margins, with absolute gains of 12.8% in accuracy on text classification and 18.9% on the GLUE benchmark.

Despite the superior performance brought by vision-and-language pretraining, it remains unclear whether learning with multi-modal data can help understand each individual modality. In this work, we investigate how language can help with visual representation learning from a probing perspective. Specifically, we compare vision-and-language and vision-only models by probing their visual representations on a broad range of tasks, in order to assess the quality of the learned representations in a fine-grained manner. Interestingly, our probing results suggest that vision-and-language models are better at label prediction tasks like object and attribute prediction, while vision-only models are stronger at dense prediction tasks that require more localized information. With further analysis using detailed metrics, our study suggests that language helps vision models learn better semantics, but not localization. Code is released at https://github.com/Lizw14/visual_probing.

Artificial Intelligence (AI) is having a tremendous impact across most areas of science. Applications of AI in healthcare have the potential to improve our ability to detect, diagnose, prognose, and intervene on human disease. For AI models to be used clinically, they need to be made safe, reproducible and robust, and the underlying software framework must be aware of the particularities (e.g. geometry, physiology, physics) of medical data being processed. This work introduces MONAI, a freely available, community-supported, and consortium-led PyTorch-based framework for deep learning in healthcare. MONAI extends PyTorch to support medical data, with a particular focus on imaging, and provide purpose-specific AI model architectures, transformations and utilities that streamline the development and deployment of medical AI models. MONAI follows best practices for software-development, providing an easy-to-use, robust, well-documented, and well-tested software framework. MONAI preserves the simple, additive, and compositional approach of its underlying PyTorch libraries. MONAI is being used by and receiving contributions from research, clinical and industrial teams from around the world, who are pursuing applications spanning nearly every aspect of healthcare.

Federated learning (FL) enables the building of robust and generalizable AI models by leveraging diverse datasets from multiple collaborators without centralizing the data. We created NVIDIA FLARE as an open-source software development kit (SDK) to make it easier for data scientists to use FL in their research and real-world applications. The SDK includes solutions for state-of-the-art FL algorithms and federated machine learning approaches, which facilitate building workflows for distributed learning across enterprises and enable platform developers to create a secure, privacy-preserving offering for multiparty collaboration utilizing homomorphic encryption or differential privacy. The SDK is a lightweight, flexible, and scalable Python package, and allows researchers to bring their data science workflows implemented in any training libraries (PyTorch, TensorFlow, XGBoost, or even NumPy) and apply them in real-world FL settings. This paper introduces the key design principles of FLARE and illustrates some use cases (e.g., COVID analysis) with customizable FL workflows that implement different privacy-preserving algorithms. Code is available at https://github.com/NVIDIA/NVFlare.

大多数图形之间的作品都是在具有交叉注意机制的编码器框架上构建的。最近的研究表明，对输入图结构进行明确建模可以显着改善性能。但是，香草结构编码器无法在所有解码步骤的单个正向通道中捕获所有专业信息，从而导致语义表示不准确。同时，输入图在交叉注意中作为无序序列被扁平，忽略了原始图形结构。结果，解码器中获得的输入图上下文向量可能存在缺陷。为了解决这些问题，我们提出了一种结构感知的交叉注意（SACA）机制，以在每个解码步骤中以结构意识的方式重新编码在新生成的上下文上的输入图表示条件。我们进一步调整SACA，并引入其变体动态图修剪（DGP）机制，以在解码过程中动态下降无关的节点。我们在两个图形数据集（LDC2020T02和ENT-DESC）上实现了新的最新结果，但计算成本仅略有增加。